SE2550383

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1613
  • Brachypodium distachyon
  • SE2550383
  • PIF/harbinger
  • To20
  • Bd4:30107808-30108149
  • TAA
  • AGGACGTGTACAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   A            --     ACA  AGCTTTCTTTTAACGGTGCCATATAGGATAAAATCTGATGTGGAAAAGAGAGAAACGAAGAAAAGACTCAAGCCTTCTCTTAATTAAGAGATGATCTCTTCACAAGAATGATAAGGCAAAGATAAGGCAATTTTCCCATTGTA
  AGG CGTGTACAATGG  GGGTG   TC                                                                                                                                               
  ||| ||||||||||||  |||||   ||                                                                                                                                               C
  TCC GTACATGTTACC  CTATT   CT                                                                                                                                               
AA   C            AA     ---  CACAGAATAGAATCCACAAGTTGCAGTAAATCTTTTCTGTTGTTTTGTACAATATGTTACCCAATAGAGAAGTACAATATAGAATTTTAATTACGAACCTACTTATTTAATTGATTTATTTACGATTCTTTTCTACTTTAGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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