SE2550386

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1616
  • Brachypodium distachyon
  • SE2550386
  • PIF/harbinger
  • To16
  • Bd3:36068656-36068956
  • TAA
  • AGGCCTTGTTTGGTATTAGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                T    ------AA        T       GTTTTGGTATTTGAGGGGTTTGGGTGTTCACACAAAACTCTCAAAAACCCAAAATACTAGTGTTTAGAAAAAAAAAAAACTAGTATGAGAAGTGTTTTAGTTTGGTA
  AGGCCTTGTTTGGTAT AGTG        TTTTTTAG CACTAGT                                                                                                           
  |||||||||||||||| ||||        |||||||| |||||||                                                                                                            
  TCCGGAACAAACCGTG TCAC        CACAAAAA ATCCCAT                                                                                                           
AA                T    AAAAACAC        -       AATAGGTGAGGTTTAATTTTTTGTGATCTTTGGGGTTTATCAACAAACCATCCTTTCCTAATCTCCCCTAATAGGGATCAAAGGGGGTGTTTTGTGAGGTAAAACAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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