SE2550387

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1617
  • Brachypodium distachyon
  • SE2550387
  • PIF/harbinger
  • To4
  • Bd3:26518425-26518622
  • CTA
  • GGCCCTGTTTGTTTCAGCTTCTTCTTCAGCTTTTGGTGCTTTTAGCAATCTCAAAAGCACTTCTTTTGTTTACACATGAAGTTGAGAAACATCT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTA              CA      T                                                                       TC
   GGCCCTGTTTGTTT  GCTTCT CTTCAGCTTTTGGTGCTTTTAGCAATCTCAAAAGCACTTCTTTTGTTTACACATGAAGTTGAGAAACATCT  
   ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
   CCGGGACAAACAAA  CGAAGA GAAGTCGAAAACCACGAAGATCGTTAGAGTTTTCGTGAAGAGGGCAAATGTGTACTTCGACTCTTTGTGGA  
ATC              CC      T                                                                       GA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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