SE2510388

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1618
  • Brachypodium distachyon
  • SE2510388
  • Tc1/Mariner
  • St2
  • Bd2:16654355-16654573
  • TA
  • TACTACCTCCGTTCCGGTATATGGGGCCCCAACGGATCCCTAGGTTAAAGATTTAACTAATTTAACATGATTTTCATATCACAAAAATTATACCATTAGGAAATAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
    A             A           A   G  C        A              T        T   C                 C         -ATA  AC
TACT CCTCCGTTCCGGT TATGGGGCCCC ACG AT CCTAGGTT AAGATTTAACTAAT TAACATGA TTT ATATCACAAAAATTATA CATTAGGAA    GA  
|||| ||||||||||||| ||||||||||| ||| || |||||||| |||||||||||||| |||||||| ||| ||||||||||||||||| |||||||||    ||   
ATGA GGAGGCAAGGCCA ATACCCCGGGG TGC TA GGATCCAA TTTTAAATTGATTA ATTGTACT AAA TATAGTGTTTTTAATAT GTAATCTTT    TT  
    G             A           G   G  T        C              C        C   A                 A         GAAG  TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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