Plant MITE

SE2520393

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1623
Brachypodium distachyon
SE2520393
Mutator
M2
Bd3:1325038-1325245
TAACTTTTA
GGTTTTGCTATTTCTTAGGCGACTGAGAAATA

Secondary structure and sequence

TSD TIR

5'

3'

TAACTTTTAC  TTT  -         A  -  A          AATA                AACAA  TTTTG         -----  GAG       AAA     AT
          GG   TG CTATTTCTT GG CG CTGAGAAATA    TTTCTTAGTCGATGAT     CC     ATTCAATCA     TT   ATTCGTG   GATTA  
          ||   || ||||||||| || || ||||||||||    ||||||||||||||||     ||     |||||||||     ||   |||||||   |||||   
          CC   AC GATAAAGAG CC GC GGTTCTTTAT    AAAGAGTCAGTTGTTA     GG     TAGGTTAGT     AA   TAGGTAC   CTGGT  
 ATTTTCAAT  CTC  A         -  A  G          GAAG                ACATC  -----         CCTAA  GAA       --C     TG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2520393

TAACTTTTACGGTTTTGCTATTTCTTAGGCGACTGAGAAATAAATATTTCTTAGTCGATGATAACAACCTTTTGATTCAATCATTGAGATTCGTGAAAGATTAATGTTGGTCCCATGGATAAGAAAATCCTGATTGGATGGCTACAATTGTTGACTGAGAAAGAAGTATTTCTTGGGCGACCGAGAAATAGACACTCCCTAACTTTTA

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