SE2550396

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1626
  • Brachypodium distachyon
  • SE2550396
  • PIF/harbinger
  • To3
  • Bd5:16237300-16237524
  • TTA
  • GGCTGCGTTTTTTTCGGCTTCTAGGACCGGCTTCTCCTAAAAGCTGTCCTCACCTGGCTTCCTGGAGAAGTCGCATCATAAATTTTGCTATACT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTA     C                A              TAA           ACC                   -C    T      --------     T   TTCAAAAT    CAG
    GGCTG GTTTTTTTCGGCTTCT GGACCGGCTTCTCC   AAGCTGTCCTC   TGGCTTCCTGGAGAAGTCG  ATCA AAATTT        TGCTA ACT        AGTT   
    ||||| |||||||||||||||| ||||||||||||||   |||||||||||   |||||||||||||||||||  |||| ||||||        ||||| |||        ||||   T
    CCGGT CAAGAAAAGCCGAAGA CTTGGCTGAAGAGG   TTCGACGGGAG   GTCGAAGGATCTCTTCGGC  TGGT TTTAAA        ATGAT TGA        TCAA   
ATTC     -                A              CTC           GAA                   AC    -      CTAATCCG     T   --------    ACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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