SE2510397

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1627
  • Brachypodium distachyon
  • SE2510397
  • Tc1/Mariner
  • St19
  • Bd2:53785418-53785660
  • TA
  • TACTCCCTCCGTTTCTTAAATTAGGGCGTATATTGTTTTCTTTGACCGAGCCTTTGACCAAGATTTAGTCTATTAATATATATTTTTGTGA

Secondary structure and sequence

TSD    TIR
5'



3'
         C    C            G                       C         -    TAG  T        -AT    T     AATA     GAT     T    TCT    CA
TACTCCCTC GTTT TTAAATTAGGGC TATATTGTTTTCTTTGACCGAGC TTTGACCAA GATT   TC ATTAATAT   ATTT TGTGA    AAATT   ATCAT GGAT   TATT  
||||||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||||| ||||   || ||||||||   |||| |||||    |||||   ||||| ||||   ||||   
ATGAGGGAG CAAG AGTTTAATTCTG ATATAACAAAGGAAACTGGCTCG AAACTGGTT CTAA   AG TAGTTATA   TGAA GCGCT    TTTAG   TAGTA TTTG   ATGA  
         A    T            G                       C         T    TGA  -        AAC    T     -ATC     TAT     -    TTC    AA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End