Plant MITE

SE2510398

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1628
Brachypodium distachyon
SE2510398
Tc1/Mariner
St14
Bd3:21977229-21977473
TA
TACTCCCTCCGTTCCTTTAAGATTGGCATATTAGCTTCCATTAAGACAAGCCTTTGACCACAAATTACTATGTCAAGGTGTGGTTTATATGACATGAAATTAGTATTGCTAGATTCG

Secondary structure and sequence

TSD TIR

5'

3'

                 T                   C            C                      C                           ---      -------   AGA    TT
TACTCCCTCCGTTCCTT AAGATTGGCATATTAGCTT CATTAAGACAAG CTTTGACCACAAATTACTATGT AAGGTGTGGTTTATATGACATGAAATT   AGTATT       GCT   TTCG  
||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||   ||||||       |||   ||||   
ATGAGGGAGGTAAGGAA TTCTAACCGTATAATCGAA GTAATTCTGTTC GAAACTGGTGTTTAATGATACA TTTCACATCAAATATACTGTACTTTGG   TCATAG       TGA   AAGC  
                 T                   A            C                      A                           TGT      TACTTCA   ---    TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510398

TACTCCCTCCGTTCCTTTAAGATTGGCATATTAGCTTCCATTAAGACAAGCCTTTGACCACAAATTACTATGTCAAGGTGTGGTTTATATGACATGAAATTAGTATTGCTAGATTCGTTATCGAAAGTACTTCATGATACTTGTGGTTTCATGTCATATAAACTACACTTTAACATAGTAATTTGTGGTCAAAGCCTTGTCTTAATGAAAGCTAATATGCCAATCTTTAAGGAATGGAGGGAGTA

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