SE2550399

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1629
  • Brachypodium distachyon
  • SE2550399
  • PIF/harbinger
  • To11
  • Bd2:50546994-50547167
  • TAA
  • AGGCTCAGTTTGGCATTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             CA   -- -- G  GATTATGACAATCCAGCTTTTTCAACAAGGTTTTGCCTATTTTTCCATTTGGCTAACCAA
  AGGCTCAGTTTGG  TTG  A  G TG                                                            
  |||||||||||||  |||  |  | ||                                                            C
  TCCGAGTCAAACC  AAC  C  G GC                                                            
AA             CC   GA TT -  ACGACACGCCTTGAATAAAATATTAGACGACACTTTTTTATGTGTGCTTTCGTCCTTTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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