Plant MITE

SE2510400

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1630
Brachypodium distachyon
SE2510400
Tc1/Mariner
St11
Bd1:60018005-60018215
TA
TACTCCCTCCGTTCCAAAACACAACTCATATAGATTTGTGTACTTGGACCAAGACAGCTCTCGTTTCTAGTGCCTGACCAATCATATTGGATTA

Secondary structure and sequence

TSD TIR

5'

3'

                                     -GTG  C   GA        GC        -----------  A       A     -------      G A   AT
TACTCCCTCCGTTCCAAAACACAACTCATATAGATTT    TA TTG  CCAAGACA  TCTCGTTT           CT GTGCCTG CCAAT       CATATT G TTA  
|||||||||||||||||||||||||||||||||||||    || |||  ||||||||  ||||||||           || ||||||| |||||       |||||| | |||   
ATGAGGGAGGTAAGGTTTTGTGTTGAGTATATCTAAA    GT AAC  GGTTTTGT  GGAGTAAA           GG CATGGGC GGTTA       GTGTAG T AAT  
                                     AAGA  A   AA        GT        AAGAGAACTAT  G       C     TTGATGT      G A   AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510400

TACTCCCTCCGTTCCAAAACACAACTCATATAGATTTGTGTACTTGGACCAAGACAGCTCTCGTTTCTAGTGCCTGACCAATCATATTGGATTAATAATAAATGGATGTGTGTAGTTATTGGCCGGGTACGGGTATCAAGAGAAAAATGAGGTGTGTTTTGGAACAAATGAGAAAAATCTATATGAGTTGTGTTTTGGAATGGAGGGAGTA

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