SE2520402

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1632
  • Brachypodium distachyon
  • SE2520402
  • Mutator
  • M13
  • Bd2:18304887-18305340
  • TAAGAATTT
  • GAATTTGAGTAAATTTCGCAAAATCACAGTTTTTTGGTAGTCGTGTCGCTGAACCACAGTTAACAAAAAACCTTTCGCGGAATCACAATTTTTTAGTCAAGTTGTCTCACTCAGCCCGAAGACCAGGTGATTTCGCGGTTTTGCTTGATTTTTTACCGGTGGGGCCCACCTGTTGGACGCTACGT

Secondary structure and sequence

TSD    TIR
5'



3'
TAA      ---                            -  GT                  C        A      T              AT    T               C             CA    A   C            G         C      G           G   C     -       GAAA    GCGGGAGTGAGAAGGAGGCTGAGGGT
   GAATTT   GAGTAAATTTCGCAAAATCACAGTTTTT TG  AGTCGTGTCGCTGAACCA AGTTAACA AAAACC TTCGCGGAATCACA  TTTT AGTCAAGTTGTCTCA TCAGCCCGAAGAC  GGTG TTT GCGGTTTTGCTT ATTTTTTAC GGTGGG CCCACCTGTTG ACG TACGT CGGCCCT    ACTT                          
   ||||||   |||||||||||||||||||||||||||| ||  |||||||||||||||||| |||||||| |||||| ||||||||||||||  |||| ||||||||||||||| |||||||||||||  |||| ||| |||||||||||| ||||||||| |||||| ||||||||||| ||| ||||| |||||||    ||||                           
   TTTAAG   CTCATTTAAAGTGTTTTAGTGTTAAAAA AC  TCAGCACAGCGACTTGGT TTAATTGT TTTTGG AAGTGTTTTGGTGT  AAAA TCAGTTTAACAGAGT AGTCGGGCTTTTG  TCAC AAA TGCCAAAACGAA TAAAGAATG CCACCT GGGTGGACAAC TGC GTGCA CCCGGGT    TGGG                          
         AAT                            C  AG                  A        C      C              GT    C               C             -C    C   C            A         C      -           A   A     A       ----    CTGGACTAGGCAATCGGGCGCTAATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End