Plant MITE

SE2510404

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1634
Brachypodium distachyon
SE2510404
Tc1/Mariner
St8
Bd3:21500169-21500408
TA
TACTCCCTCCGTTCCTAATTAATTGGCGCCGTCTGTTTTGCAAAGAAATCCCTGTTAATTTCTGAAATAAACCTGCAGTCCACGTTCTATCGGAACTTTTGCG

Secondary structure and sequence

TSD TIR

5'

3'

                               T                  C    T                C            T  A   ---    ---TT     AAAAAACCC     T   T
TACTCCCTCCGTTCCTAATTAATTGGCGCCG CTGTTTTGCAAAGAAATC CTGT AATTTCTGAAATAAAC TGCAGTCCACGT CT TCG   GAAC     TTGCG         TGTTG TTT 
||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||| |||||||||||| || |||   ||||     |||||         ||||| ||| C
ATGAGGGAGGCAAGGATTAATTAACCGTGGC GACAAAACGTTTCTTTGG GACA TTAAAGGCTTTATTTG ACGTCAGGTGTA GA AGT   TTTG     GACGC         ACAAC AAA 
                               C                  A    T                T            -  -   TAA    CATCT     ---------     T   G

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510404

TACTCCCTCCGTTCCTAATTAATTGGCGCCGTCTGTTTTGCAAAGAAATCCCTGTTAATTTCTGAAATAAACCTGCAGTCCACGTTCTATCGGAACTTTTGCGAAAAAACCCTGTTGTTTTTCGAAATCAACACGCAGTCTACGTTTAATTGAAGATGTGGACTGCATGTTTATTTCGGAAATTTACAGAGGTTTCTTTGCAAAACAGCCGGTGCCAATTAATTAGGAACGGAGGGAGTA

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