Plant MITE

SE2510406

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1636
Brachypodium distachyon
SE2510406
Tc1/Mariner
St7
Bd3:22218478-22218718
TA
TACTCCCTCCATTTCACAAAGAATGGCACGCACGCATTTCAAG

Secondary structure and sequence

TSD TIR

5'

3'

                           ACG     A   - A  ATTTT           CA           GATT  -   C              AA       A     TTCGTATTT
TACTCCCTCCATTTCACAAAGAATGGC   CACGC TTT C AG     GCTTTGACCGA  ATTAGACTAAT    TG AGG TTATGTGTTACAAA  TTATATC TTGGA         
|||||||||||||||||||||||||||   ||||| ||| | ||     |||||||||||  |||||||||||    || ||| ||||||||||||||  ||||||| |||||         C
ATGAGGGAGGTAAAGTGTTTCTTACCG   GTGCG AAA G TC     TGAAACTGGTT  TAATCTGGTTA    AC TCT AATATATAATGTTT  AATATAG AACCT         
                           CAG     -   T C  CAGCT           AC           ACAT  A   -              AA       C     TTCTAAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510406

TACTCCCTCCATTTCACAAAGAATGGCACGCACGCATTTCAAGATTTTGCTTTGACCGACAATTAGACTAATGATTTGAGGCTTATGTGTTACAAAAATTATATCATTGGATTCGTATTTCAAAAATCTTTCCAACGATATAAAATTTGTAATATATAATCTACATACAATTGGTCTAATCATTGGTCAAAGTTCGACCTCGTAAAGCGTGGACGCCATTCTTTGTGAAATGGAGGGAGTA

Copy Cancel