SE2520407

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1637
  • Brachypodium distachyon
  • SE2520407
  • Mutator
  • M2
  • Bd3:39049821-39050028
  • TAATTATAA
  • TAATTATAAGGGAGTGTCTATTTCTCAGTCGCCTAAGAAATAGTTATTTCTCAACC

Secondary structure and sequence

TSD    TIR
5'



3' 
          AA  GAG  T        C  T  C  A                -------------     --AACAATC    CGATCAAATCAAGATTTTCTTATCCATCG
   TAATTAT  GG   TG CTATTTCT AG CG CT AGAAATAGTTATTTCT             CAACC         GTAG                             
   |||||||  ||   || |||||||| || || || ||||||||||||||||             |||||         ||||                             G
   ATTAATG  CC   AC GATAAAGA TC GC GA TCTTTATTGATAAAGA             GTTGG         TTAG                             
AAT       --  AAA  -        A  C  T  C                ATCAGCTACTATT     AAAACTAAG    TAACTCTAAGCACATCCTAATTACATCCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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