SE2510408

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1638
  • Brachypodium distachyon
  • SE2510408
  • Tc1/Mariner
  • St5
  • Bd1:59886515-59886758
  • TA
  • TACTACCTCCTTTTCAAAAAGGTTGGCGTATTTGGTTTCGTTAAGACGAAGCTTTGACCAAGAATAACTTTATTAATATGTAATTTATATGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
    A           A                               A                A                A   -----       ----A  AAACCACAATTATCAGCAAGA
TACT CCTCCTTTTCA AAAGGTTGGCGTATTTGGTTTCGTTAAGACG AGCTTTGACCAAGAAT ACTTTATTAATATGTA TTT     ATATGAT     GG                     
|||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||     |||||||     ||                     A
ATGA GGAGGGAAAGT TTTCCAACCGCATAAACCAAAGCAATTCTGT TCGAAACTGGTTCTTA TGAAATAATTATACGT AAA     TATACTA     TA                     
    G           G                               A                A                A   AATTC       AAATA  GTTATCTAAGTAGAAGTTTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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