SE2520410

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1640
  • Brachypodium distachyon
  • SE2520410
  • Mutator
  • M2
  • Bd1:52570386-52570593
  • TTATGATAT
  • TATGATATCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
T   G   TC  TTTTG           G  A          AC         A        AACAA  TTTTG         CT  GA   A   AAGA      TAA
 TAT ATA  GG     CTATTTCTTAG CG CTAAGAAATA  TATTTCTCA TCGATAAT     CC     ATTCAATCA  GA  TTC TGT    TTATTG   
 ||| |||  ||     ||||||||||| || ||||||||||  ||||||||| ||||||||     ||     |||||||||  ||  ||| |||    ||||||    
 ATA TAT  CC     GATAAAGAGTC GC GATTCTTTAT  ATAAAGAGT AGTTGTTA     GG     TAGGTTAGT  CT  AAG ATA    GGTAGC   
T   G   TC  TCACA           A  G          CA         C        GCATC  -----         -T  AA   A   ----      CCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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