SE2530413

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1643
  • Brachypodium distachyon
  • SE2530413
  • hAT
  • Hat25
  • Bd4:28503164-28503349
  • AACAGGAC
  • CATGGGCGGATCCAGGATA

Secondary structure and sequence

TSD    TIR
5'



3' 
AACAGGAC        GA     G   AA   --  A  GG  GCAAAA   TATTCATGAACCAATCGGACAATTGAGAGTGGGGGCAGCCTCTCTAT
        CATGGGCG  TCCAG ATA  AAT  TG GA  GG      ATG                                               
        ||||||||  ||||| |||  |||  || ||  ||      |||                                                
        GTACCCGC  AGGTC TAT  TTC  CA CC  CC      CGT                                               
CAGGACAA        AT     G   -G   GA  -  --  ------   CGACGGGGGTGAGCTAAAAAAAAGTGAGAGAATATTGTTCGAACACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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