SE2550421

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1651
  • Brachypodium distachyon
  • SE2550421
  • PIF/harbinger
  • To15
  • Bd3:46163904-46164213
  • TAG
  • TAGGGCCTCCTTTGATTC

Secondary structure and sequence

TSD    TIR
5'



3'
          C        AAAA    TCCATA    TTT      CT    A   ---G     -- TTTTTCT ACGTCGGTCGTTTGATTCGTAGGATTAAATCCTATATGAATTTTTCCTAAGGATTCATTTGTACTACATTTCATAGAAAAATTTACATCC
 TAGGGCCTC TTTGATTC    GATT      GGAA   TGAAGG  TGAA TCC    TAGGA  A       A                                                                                          
 ||||||||| ||||||||    ||||      ||||   ||||||  |||| |||    |||||  |       |                                                                                           
 ATCCCGGAG AAACTAAG    CTAA      CCTT   ACTTCC  TATC CTT    CATCT  A       C                                                                                          
G         -        CATC    ------    TTT      -T    -   TTTA     TA ------- GTTACAGTACAGGTGAACTAGGGATATCCTAAAACAAACGTAGTTTCAAACAAACTAACCTGGTTTTCTAAAGAAGGTTCTCCAACCTCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End