SE2510422

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1652
  • Brachypodium distachyon
  • SE2510422
  • Tc1/Mariner
  • St8
  • Bd3:19669605-19669844
  • TA
  • TACTCCCTCTATTCCTAATTAATTGGCGCCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
          A                     -AA      C     AACCCTTGCTATTTCCCGAAATCGACCTGCAGTCCACGTTCTACCAGAACTTTTGCAAAAAAAACCTGTAGTTT
TACTCCCTCT TTCCTAATTAATTGGCGCCGG   ATTTCG AAATA                                                                          
|||||||||| |||||||||||||||||||||   |||||| |||||                                                                           
ATGAGGGAGG AAGGGTTAATTAACCGCGGCC   AAAACG TTTTT                                                                          
          C                     GGT      -     TTTGGGATAATTAAATGCTTTAGTTCGACGTCATGTGTAGAAGTTAACTTGTACCTGACGCACAACTAAAGCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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