SE2550423

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1653
  • Brachypodium distachyon
  • SE2550423
  • PIF/harbinger
  • To16
  • Bd3:55073163-55073461
  • TCA
  • AGGCCTTGTTTGGTGTTAGTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TC               T   T  -AT       T          -    TA  -    G   --------   -   GTTCACCCAAAACACTTAAAAACCCAAAACACTAGTGTTTTCTAAAAAAAAACACTAGTTTGAGAAGTGTTTTAATTTG
  AGGCCTTGTTTGGTG TAG GT   TTTTTAG CACTAGTGTT TTGG  TT TGAG GTT        TTG GGT                                                                               
  ||||||||||||||| ||| ||   ||||||| |||||||||| ||||  || |||| |||        ||| |||                                                                                
  TCCGGGACAAACCAT ATC CA   ATCTCAC AAAAGATCCT TATT  GG GAGG TTT        GTG TGT                                                                               
AC               C   T  AAA       -          A    -T  T    -   AACTTTTT   A   TTGGAGTTTACCAACAAACCATCCTTCCCAAACCTCCTTTAATAGGGATCAAAAGGTTGTTTTGTGAGGTAAAAACATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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