Plant MITE

SE2530424

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1654
Brachypodium distachyon
SE2530424
hAT
Hat9
Bd4:5845564-5845865
ACTAGCAT
CTAGCATTATACCTGGGCATGGGT

Secondary structure and sequence

TSD TIR

5'

3'

  A    CA             -----     ---       C  GAA CCCGATGTCCCGGGCCAGGCTCGGGCCTCACTTTCCAGTCCCAAGCCCGGCCCGAAAGCCCGAAAAAAGCCTGAAATGACTAAAAACAGGTATTTTGTAGGAAAAATAGG
   CTAG  TTATACCTGGGCA     TGGGT   GGCCCGA CC   G                                                                                                              
   ||||  |||||||||||||     |||||   ||||||| ||   |                                                                                                               
   GATC  AATATGGACCCGT     GCCCG   CGGCCCG AA   A                                                                                                              
TAC    --             TTGGG     GCC       -  --- TATTTTCGGGCTGCCAGTTTCGACTTCGGGCTCGGGCCGGGCTTTGGGGTTTTTATCCGGTAAATTCGTAGCTTTATTAATAAAAGTCTTATTTATTTACTAAAAAATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530424

ACTAGCATTATACCTGGGCATGGGTGGCCCGACCCGAAGCCCGATGTCCCGGGCCAGGCTCGGGCCTCACTTTCCAGTCCCAAGCCCGGCCCGAAAGCCCGAAAAAAGCCTGAAATGACTAAAAACAGGTATTTTGTAGGAAAAATAGGTATAAAAAATCATTTATTTATTCTGAAAATAATTATTTCGATGCTTAAATGGCCTATTTTTGGGGTTTCGGGCCGGGCTCGGGCTTCAGCTTTGACCGTCGGGCTTTTATAAAGCCCGGCCCGGCCCGGGGTTTGCCCAGGTATAACTAGCAT

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