SE2510425

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1655
  • Brachypodium distachyon
  • SE2510425
  • Tc1/Mariner
  • St3
  • Bd1:17604750-17605009
  • TA
  • TACTCCCTCCGTTCCCAAAGATAAGATGTTCTAGCTTTGTCCTAAGTCAAATTTCTTAAATTTTACCAAGTTTATAGAAAAACCTAC

Secondary structure and sequence

TSD    TIR
5'



3'
    C    C     C   GA                           A     C     T   -         A        CC   CCACATCTCT       AGT    TTTAT     CC  C    TATA
TACT CCTC GTTCC AAA  TAAGATGTTCTAGCTTTGTCCTAAGTC AATTT TTAAA TTT ACCAAGTTT TAGAAAAA  TAC          ATATCTA   TATT     TAAAT  AT ATGA    
|||| |||| ||||| |||  ||||||||||||||||||||||||||| ||||| ||||| ||| ||||||||| ||||||||  |||          |||||||   ||||     |||||  || ||||    T
ATGA GGAG CAAGG TTT  ATTCTACAAGATCGAAACAGGATTCAG TTGAA AATTT AAA TGGTTTAAA ATCTTTTT  ATG          TATAGAT   ATAG     ATTTA  TA TACT    
    T    A     A   AC                           C     A     C   C         C        AT   --------AC       ATT    --TTT     TA  A    TCTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End