Plant MITE

SE2550430

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1660
Brachypodium distachyon
SE2550430
PIF/harbinger
To11
Bd3:8901731-8901904
TAA
AGGCTCAGTTTGGCATTGC

Secondary structure and sequence

TSD TIR

5'

3'

TA      A            TGAAC  T    ---C  TGAACTTATTTTATAATCTGCTGTGAAAATATACACACGAATGTAGGAAAAA
  AGGCTC GTTTGGCATTGC     TG GCTG    GC                                                    
  |||||| ||||||||||||     || ||||    ||                                                    G
  TCCGAG CAAACCGTAACG     CC ACCT    GT                                                    
AA      G            -----  -    AATA  ATTAGGGCAAAAAGGGTGGGCGAAAAGTGATAAAAGCACAAACTGATTGGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550430

TAAGGCTCAGTTTGGCATTGCTGAACTGTGCTGCGCTGAACTTATTTTATAATCTGCTGTGAAAATATACACACGAATGTAGGAAAAAGTTGGTTAGTCAAACACGAAAATAGTGAAAAGCGGGTGGGAAAAACGGGATTATGATAATCCACCGCAATGCCAAACGGAGCCTAA

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