SE2550431

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1661
  • Brachypodium distachyon
  • SE2550431
  • PIF/harbinger
  • To20
  • Bd2:47385181-47385521
  • TTA
  • AGGGCATGTACAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                --TT       CTGTCTTATCTTAGGCATTCCACGTCAATTAGAAAAGACAACAAAACATGTTGTACAATGGGTTATCTCTTAGTGTTCTATCTTAGAATTAATGTTTAGATGAATAAAATTAACTAATAAATGCTAAGAAAAGGTGAAATCT
  AGGGCATGTACAATGG    GATAAGA                                                                                                                                              
  ||||||||||||||||    |||||||                                                                                                                                              A
  TCCCGTACATGTTACC    TGCAGTC                                                                                                                                              
AT                CCAC       GGAAGAGAATCGCTACGGTGTATTCTATTTTAGACTACACCTTCTCTCTCTTTGCTTCTTTTCCGTGTTCGGAAGAGAATTAATTCTCTACTAGAGAAGTGTTCTTACTATTCCGTTTCTATTCCGTTTAAATGGTAACATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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