SE2550437

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1667
  • Brachypodium distachyon
  • SE2550437
  • PIF/harbinger
  • To16
  • Bd3:55073163-55073461
  • TGA
  • AGGCCCTGTTTGGTAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TG     C        A  AG     TTA        -      AT    ACCA    --   -  GAAAAAC    CA    TCAAATGGTTGTTTGGTAGGAAGGGTTTGGAGGAAATTATCCCTAGTTTTCCAACAAAACACTCCATTTTTGTACCA
  AGGCC TGTTTGGT GT  AGTTT   GAGTGTTT TCTAGG  ATAA    CTCC  AAA TT       ACTA  AACC                                                                             
  ||||| |||||||| ||  |||||   |||||||| ||||||  ||||    ||||  ||| ||       ||||  ||||                                                                             A
  TCCGG ACAAACCA CA  TCACA   AAAAAATC GTGATC  ACAA    AACC  AAA TC       CAAA  ACCC                                                                             
AG     A        -  -A     --T        A      --    ----    AT   C  ------C    --    ACAAGTGGGTTTTGTGAATTTTTGGGTTTTGTGATCACAAAAGATTTTTTTTTGTGATCAAACTCTTCACAAAATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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