SE2550438

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1668
  • Brachypodium distachyon
  • SE2550438
  • PIF/harbinger
  • To3
  • Bd1:53443057-53443281
  • CTA
  • TAGGGTGCGTTCTTTTCGGATTCTAGGACCGGCTTCTCCTAGAAGCTGCCCTCACCTAACTTGCTGGAGAAGCCGCATCACAAATTTAGCTAGACTTCCAAAGTAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
C     T  --           A    A              T          C  AC   A   GC            -   AC      AGC   A  T     G      AG
 TAGGG GC  GTTCTTTTCGG TTCT GGACCGGCTTCTCC AGAAGCTGCC TC  CTA CTT  TGGAGAAGCCGC ATC  AAATTT   TAG CT CCAAA TAGTTT  
 ||||| ||  ||||||||||| |||| |||||||||||||| |||||||||| ||  ||| |||  |||||||||||| |||  ||||||   ||| || ||||| ||||||  G
 ATCCC CG  CAAGAAAAGCC AAGG CCTGGCCGAAGAGG TCTTCGACGG AG  GGT GAA  ACCTCTTCGGCG TGG  TTTAAA   ATC GA GGTTT ATCAAA  
      -  GT           G    A              C          A  GA   C   GA            G   -A      CTA   C  T     G      CC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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