SE2550440

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1670
  • Brachypodium distachyon
  • SE2550440
  • PIF/harbinger
  • To7
  • Bd3:51565193-51565619
  • TAA
  • AGAGCATCTCCAATGACATCCCTCAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TA      T        -ACA    T    -GCTA       -      ---------ATTTA      - TGGACATTTTGTCTCCAAAATCATCTCCCAATGGCATCCCCTAAACGGAGAAAATGACATGTTTGTCCAGACACATCCCCCAAACTTGCCCCAAATTTGGGGGAGGTTTTGGGTGTCTGGACATTGTCCGGTGCTCTTTTTTGTCCGCT
  AGAGCA CTCCAATG    TCCC CAAA     TCCCAAA TGTCCT              GGAGAT A                                                                                                                                                     
  |||||| ||||||||    |||| ||||     ||||||| ||||||              |||||| |                                                                                                                                                     C
  TCTCGT GAGGTTAC    AGGG GTTT     AGGGTTT ACAGGG              CCCCCT G                                                                                                                                                     
AA      T        CCTA    -    AAAAC       T      AAAAAACCAGTAAA      C TTCACCTGTATACAGGAGGAGTACAGGTGGGAGTAGTGGGTTGGTGTAGGAGGTTTAAAGAGGTAGTTTAATCGAAAAGGAAGAGAAATAGGAAAGAGGAGAGAAAAAGTGTAAAAGAAGAGGAAAAGGGTAGAGAACAACACCCCGGC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End