Plant MITE

SE2550442

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1672
Brachypodium distachyon
SE2550442
PIF/harbinger
To30
Bd3:12043108-12043396
TAA
AGGGCATCCGCAATGG

Secondary structure and sequence

TSD TIR

5'

3'

TA                CTAA     AG CGA TCTTATTTGAAATTTGTTTACGTAAGGAAAGAAAAATAGGAGAGAGAAGAGAATTGACTCTTCGTGGAGAGTCAGACTCTTAAGGAAAGAATCAACTAAGAGTCAACCTTTTAA
  AGGGCATCCGCAATGG    CTCTT  C   C                                                                                                                  
  ||||||||||||||||    |||||  |   |                                                                                                                  C
  TCCCGTAGGCGTTACC    TCTCA  G   T                                                                                                                  
AA                ---A     -- --- CGTGACTGAGAGGTGCAGTAAAATCTCAGTTGCTTTTTTATTGTGCACGTTACTCAACACAGAAATTAAACCGAGATCGACTAAACAATCGTAATTTACACTACAACATATTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550442

TAAGGGCATCCGCAATGGCTAACTCTTAGCCGACTCTTATTTGAAATTTGTTTACGTAAGGAAAGAAAAATAGGAGAGAGAAGAGAATTGACTCTTCGTGGAGAGTCAGACTCTTAAGGAAAGAATCAACTAAGAGTCAACCTTTTAACCATTATACAACATCACATTTAATGCTAACAAATCAGCTAGAGCCAAATTAAAGACACAACTCATTGCACGTGTTATTTTTTCGTTGACTCTAAAATGACGTGGAGAGTCAGTGCTGACTCTACCATTGCGGATGCCCTAA

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