SE2520456

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1686
  • Brachypodium distachyon
  • SE2520456
  • Mutator
  • M31
  • Bd3:59133947-59134177
  • CTTTCCCAG
  • AGGGAAAATAATCTTAAGAGACCCAGTCTCTCGAGAGACC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTTCCC                  A    CA       ---------        C        ATAGGCCATGTGGATAGATTAGCCTTTAAAACTAATCTCAAAGCATTAGCAGTGA
       AGGGAAAATAATCTTAAG GACC  GTCTCTC         GAGAGACC TCTGCATG                                                       
       |||||||||||||||||| ||||  |||||||         |||||||| ||||||||                                                       G
       TCCCTTTTATTAGGATTC CTGG  CAGAGAG         CTTTCTGG TACAAGTA                                                       
GACCCTT                  G    AC       GAGGTCCGA        -        GAACACTGTGCACCCTTTAGTTGACGTAATATTTGTACTAATAATAAAAAGAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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