Plant MITE

SE2510457

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1687
Brachypodium distachyon
SE2510457
Tc1/Mariner
St25
Bd1:60736767-60737030
TA
TACTCCCTCCGTCTCAAAATAGTTGTACATTTAGGTTTGCCCCAAGTCAAACTT

Secondary structure and sequence

TSD TIR

5'

3'

         C  C  A            A          C CC    C      CTCT     T   CAAC      G AA         TAAG      -     CAAATTAG TTCATCGTATCCGTCATGAAAA
TACTCCCTC GT TC AAATAGTTGTAC TTTAGGTTTG C  AAGT AAACTT    AAGTT GAC    TTTATA A  AAATATGTT    ATTTAC AACAC        T                      
||||||||| || || |||||||||||| |||||||||| |  |||| ||||||    ||||| |||    |||||| |  |||||||||    |||||| |||||        |                      T
ATGAGGGAG CA AG TTTATCAACATG AAATCCAAAC G  TTCA TTTGAA    TTCAA CTG    AAATAT T  TTTATATAG    TAGATG TATGA        T                      
         A  A  A            C          A AA    T      TCAC     T   ATCT      G -C         -TTA      C     -------- TTACTTATGTTATACTTGTGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510457

TACTCCCTCCGTCTCAAAATAGTTGTACATTTAGGTTTGCCCCAAGTCAAACTTCTCTAAGTTTGACCAACTTTATAGAAAAAATATGTTTAAGATTTACAACACCAAATTAGTTTCATCGTATCCGTCATGAAAATATGTGTTCATATTGTATTCATTTAGTATCGTAGATATTGATATATTTCTGTATAAATCTAGTCTAACTTCACTAAGTTTTACTTAAGACAAACCTAAACGTACAACTATTTAGAAACAGAGGGAGTA

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