SE2550474

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1704
  • Brachypodium distachyon
  • SE2550474
  • PIF/harbinger
  • To12
  • Bd4:47160438-47160796
  • TAA
  • AGAGCATCTCCAGCCGCCCTCCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
                TA            GC  -        ------AA   C    ---- AACGTTAAATGGGGACGCCAGCGCTGAAAAACCCATCCAGTCCACTCCCCTAAATCAAAAAAGTAGCCGGCGTGGTCCAAGAATTTAGCCGGCGCCCCCAATCCACTCCCTACTCACAGGGGGGCTAGCGGAGGCGC
                  AGAGCATCTCCA  CG CCCTCCTA        GGC CCCC    A                                                                                                                                         
                  ||||||||||||  || ||||||||        ||| ||||    |                                                                                                                                         C
                  TCTCGTAGAGGT  GT GGGAGGAT        GGC CGCG    G                                                                                                                                         
CTCTCTGAGCAATAATAA            GA  A        ATAAAGTA   -    TACC GTATACTCCTCCGCGGCCGTGTTGTTAAACAAACCCCACCTTGGCCGTGGGTCGGCGTGGGGGTTTGTAGCGAGGGGGGAGGTTTAAACCAAACAGATTGACTATCACCACCGGGCGCGACGAAAAGTCAAAATCGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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