SE2520477

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1707
  • Brachypodium distachyon
  • SE2520477
  • Mutator
  • M32
  • Bd4:45243116-45243568
  • TGACATGTG
  • ACATGTGAGAGAAGATATCCAGTGCTTCCACCCCTTAGGATGCTACCGTGCGTTGGGAGCACGGTAGCACCTCTAAAAAGTTTTCAAAAAATTTGAAATAAATTGAGTGAGTTCATAAGATGTGTGTCTACCATGTCACAAAGATTCAACTTCAAATTCATTATATCCAGAGAGAAACAAAAAAGACAAATGCA

Secondary structure and sequence

TSD    TIR
5'



3'
TG      G                G   C  C C      A  C        G  G  A CA        CC                 AAA       T          A      A                          A     C                C  G               A     G  AACA   A   T  -     -  TTTGT TTT
  ACATGT AGAGAAGATATCCAGT CTT CA C CTTAGG TG TACCGTGC TT GG G  CGGTAGCA  TCTAAAAAGTTTTCAAA   TTTGAAA AAATTGAGTG GTTCAT AGATGTGTGTCTACCATGTCACAAAG TTCAA TTCAAATTCATTATAT CA AGAGAAACAAAAAAG CAAAT CA    TGA TAG TC TAGAA AT     C   
  |||||| |||||||||||||||| ||| || | |||||| || |||||||| || || |  ||||||||  |||||||||||||||||   ||||||| |||||||||| |||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| || ||||||||||||||| ||||| ||    ||| ||| || ||||| ||     |    
  TGTACA TCTCTTCTATAGGTCA GAG GT G GAATCC AC ATGGCACG GG TT C  GCCATCGT  AGATTTTTCAAAAGTTT   AAACTTT TTTAACTCAC CAAGTA TCTATACACAGATGGTACAGTGTTTC AAGTT AGGTTTAAGTAATGTA GT TCTTTTTGTTTTTTC GTTTA GT    ACT ATC AG GTTTT TG     G   
AG      G                -   A  A A      C  A        A  G  G AC        AA                 AAA       T          C      C                          A     T                C  G               C     G  CTAC   C   C  C     C  TTTTT TGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End