SE2520482

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1712
  • Brachypodium distachyon
  • SE2520482
  • Mutator
  • M33
  • Bd3:27888324-27888947
  • GACCCGGAG
  • CCGGAGGGACCCGGATCCTCTAACGTGAAGAAGAGAAGTCAGAGGTGACTTCCCTTCAGCAAACATATGTTT

Secondary structure and sequence

TSD    TIR
5'



3'
GAC    -AG   C           A                     -        C            AT      CC    TA   GCACGCCGCCGCGTTCCCTTGTTCTTTTCGTCGCATGCCCGCCGCCTGCTCGCGTGGTCTGCTCGCGCCACTGCCAGGTCCGGGAGGCTGCAGGGGACATCGCGGCGTCGGTGGTGGCGTGAATTGCGACGGCGTCGACACAAATTGCAGTGGCGACGACTGGCGTCGGGCCGAGTACCGGCAACGCGGGGTTCGGCGGCGCTGGTGCTGGTGCCGCCTCCTCCGAC
   CCGG   GGA CCGGATCCTCT ACGTGAAGAAGAGAAGTCAGA GGTGACTT CCTTCAGCAAAC  ATGTTT  ATTA  AAC                                                                                                                                                                                                                                   
   ||||   ||| ||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||  ||||||  ||||  |||                                                                                                                                                                                                                                   T
   GGCC   CCT GGCCTAGGAGA TGCACTTCTTCTCTTCAGTCT CCACTGAA GGAAGTCGTTTG  TGCAAA  AGTA  AGG                                                                                                                                                                                                                                   
 GA    CAG   A           C                     T        A            CC      --    --   TTTTTTATTTTATTTTCTTCTTACTTTAGTCGTTGATTGTGCGCGGCCGTGGCGCTCAACTAGGCGGCGGACGTGGACGTGCGGCGGGCGGTAGGCCTCTCTTCTTTTACCTTAGCCGCCTACAAACCGGTTTTGCTGCTACCGAGCAGTCGCAGGAGGCGCACACCGCCGCCGTGACATGAAGCTGCCGCTCCTGCACGACGGCCGCTGCGTACGCCTCGTGGGCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End