Plant MITE

SE2510483

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1713
Brachypodium distachyon
SE2510483
Tc1/Mariner
St32
Bd1:44111115-44111333
N.A.
CTCCCTCCTTTTCAGATTATAAGGCATGTGTGTTCCTAGATCATCCGTTTGACCACTAAAATACGTACT

Secondary structure and sequence

TSD TIR

5'

3'

 TA               A  A            --       G      C         CTA     C T   ATAT   A       -------      -C   GAA    TG
   CTCCCTCCTTTTCAG TT TAAGGCATGTGT  GTTCCTA ATCATC GTTTGACCA   AAATA G ACT    TGC TACAAAG       TATTAG  ACT   TTTG  
   ||||||||||||||| || ||||||||||||  ||||||| |||||| |||||||||   ||||| | |||    ||| |||||||       ||||||  |||   ||||   
   GAGGGAGGAAAAGTC AA ATTCCGTGTACG  TAAGGAT TAGTAG TAAACTGGT   TTTAT C TGA    ACG GTGTTTT       GTAATC  TGA   AAAC  
ACA               A  C            TA       A      T         TGC     A -   ACAT   -       GTATATG      TT   AGA    TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510483

TACTCCCTCCTTTTCAGATTATAAGGCATGTGTGTTCCTAGATCATCCGTTTGACCACTAAAATACGTACTATATTGCATACAAAGTATTAGCACTGAATTTGTGTTCAAAAGAAGTTTCTAATGGTATATGTTTTGTGGCATACAAGTCATATTTCGTTGGTCAAATTGATGATATAGGAATATGCATGTGCCTTACAAACTGAAAAGGAGGGAGACA

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