Plant MITE

SE2550486

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1716
Brachypodium distachyon
SE2550486
PIF/harbinger
To6
Bd4:43007178-43007377
TAA
AGAGCATGTACAATGCAAGGTGCTAAGACAGGTGCTTACGAAAATAAACCAAGCATTTTTTTAAGCACCAGTGCTTATTTGTATAGAGGAGGTGCC

Secondary structure and sequence

TSD TIR

5'

3'

TA                      -   A ACA    C   C      A    AA C      -        CA   C       T  A   G     C AAA
  AGAGCATGTACAATGCAAGGTG CTA G   GGTG TTA GAAAAT AACC  G ATTTTT TTAAGCAC  GTG TTATTTG AT GAG AGGTG C   
  |||||||||||||||||||||| ||| |   |||| ||| |||||| ||||  | |||||| ||||||||  ||| ||||||| || ||| ||||| |    
  TCTCGTACATGTTACGTTCTAC GAT C   CCAC AAT TTTTTA TTGG  C TAAAAA AATTCGTG  TAC AATAAAT TG TTT TCTAC G   
AA                      A   - CAC    A   C      A    -- -      C        AC   A       C  A   G     A ATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550486

TAAGAGCATGTACAATGCAAGGTGCTAAGACAGGTGCTTACGAAAATAAACCAAGCATTTTTTTAAGCACCAGTGCTTATTTGTATAGAGGAGGTGCCAAATTAGACATCTGTTTAGTCTAAATAAACATCAGTGCTTAACAAAAATCGGTTAATTTTTCTAAACACCCACCTAGACATCTTGCATTGTACATGCTCTAA

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