SE2550490

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1720
  • Brachypodium distachyon
  • SE2550490
  • PIF/harbinger
  • To35
  • Bd4:23963111-23963558
  • TTA
  • GGCCCTCTTTGATTCATACGAAATGTGGAGGAAAAATGTAAGGATAGGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTA     T            C  -------     -   --      -----   -TA          ATTTTCCTTT     CACTATTCACTCGTTTGATTCAAAGGAATTGGGTAAAGGAAAAGTGGAAGAAAAATTCCTTTGATCTTTGTTTCAAAGGAAAAACGTAGGAATTTAACAATCCACTCATACCTCTTTTTTTAATTCCTTTGCACACAAAATGAGACAAGAGC
    GGCCC CTTTGATTCATA GA       AATGT GGA  GGAAAA     ATG   AGGATAGGAA          GGTGG                                                                                                                                                        
    ||||| |||||||||||| ||       ||||| |||  ||||||     |||   ||||||||||          |||||                                                                                                                                                         
    CCGGG GAAACTAAGTAT CT       TTGCG CCT  TCTTTT     TAC   TCTTATCCTT          GGACA                                                                                                                                                        
ATTC     -            C  AAAACTT     T   TG      CCATG   TTA          --------AC     CATTTTATCTCCTAAGTTTTTGTGTCCTTAAAACATTTGTACCCACAAACTAAGTATTCTTATTCTTTTTGTGTCCTTAAGATGTTTTGTGCCAGTTTAATTTCAGTTTGGTGTACCTAATCATATTAATCTTACAATAATATGTCTACTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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