SE2550505

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1735
  • Brachypodium distachyon
  • SE2550505
  • PIF/harbinger
  • To40
  • Bd1:24225046-24225413
  • TAA
  • AGGGCATCTCCAAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                      --              TCC      TTTTGTCCACGGACAAAAAAAACCAACCCAATGGGGCTTGCCAAATCAATGCTATATGTCTATTTCTCCACGGACATGCTATACTCAAGCCAAATTTGGCATTGGTTTGGCAAGTCTAGACATTGTCCACGGACAAG
  AGGGCATCTCCAAGGGGACTTG  CCAAATCGATGCCA   GTCCGT                                                                                                                                         
  ||||||||||||||||||||||  ||||||||||||||   ||||||                                                                                                                                         C
  TCCCGTAGAGGTTCCCACTTGT  GTTTACCTGTACTG   TATAGG                                                                                                                                         
TA                      CC              ---      TCTGTTGTACCGTACAGCTGTTGATGGTGAAGAGGGTTGTCCACGTACAGTTTACCTGTACAGTAGGCAGGTGAACTATATACAGGTGTGCGTACGGTTTTTGAAAAAAAAATAAAAACACGGTTATACGGATGCAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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