Plant MITE

SE2550514

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1744
Brachypodium distachyon
SE2550514
PIF/harbinger
To21
Bd3:20593398-20593675
TTA
AGGCTGGTCATAGTGCATGTAACTTAAGTAGTAATAT

Secondary structure and sequence

TSD TIR

5'

3'

TT                  -     -TT            AG          ----  CATTTTAGTAACATGGCATGATAATTAATGAAGAAAGAGAGAGAGGTGATAACTAGATATGTTACCATCACATCACATTTCTC
  AGGCTGGTCATAGTGCAT GTAAC   AAGTAGTAATAT  GTGCCAACTA    GA                                                                                   
  |||||||||||||||||| |||||   ||||||||||||  ||||||||||    ||                                                                                   A
  TCCGACCAGTATCACGTA CATTG   TTCATTATTGTA  ATATACAATG    GA                                                                                   
AT                  T     TAT            -C          ATCA  TACAATGGTACATTTATCACTCCCATTGTATTAAACACCATTGTATATTTGGAGTAATTAACAGAATATCTGAGTAAGATAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550514

TTAGGCTGGTCATAGTGCATGTAACTTAAGTAGTAATATAGGTGCCAACTAGACATTTTAGTAACATGGCATGATAATTAATGAAGAAAGAGAGAGAGGTGATAACTAGATATGTTACCATCACATCACATTTCTCAAGATAGAATGAGTCTATAAGACAATTAATGAGGTTTATATGTTACCACAAATTATGTTACCCTCACTATTTACATGGTAACATAGACTAGTAACATATACATGTTATTACTTTATGTTACTATGCACTATGACCAGCCTTA

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