SE2550517

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1747
  • Brachypodium distachyon
  • SE2550517
  • PIF/harbinger
  • To10
  • Bd2:24589031-24589321
  • TTA
  • AGAGCAAGAATAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT         A    A     AC    GCAGGCTCTAAAGATTTAAATATTGTATCTTTGCTTAGTTGGAGAAAAGAGAAAAGGAGAGAGAAGAGAAGTGGGCTACTATCTAATAGCAAGCTGCAACACGTGCTCTTAGGCACTCT
  AGAGCAAGA TAAT ATGTG  GTAA                                                                                                                       
  ||||||||| |||| |||||  ||||                                                                                                                        
  TCTCGTTCT ATTA TCAAA  TCGG                                                                                                                       
AT         A    -     --    ACGACGGCCGATATTTGAAAACGGTACAGTAAAAATCGATTGTATATCGATCGTACATATTATTCCACCGATGTTCTTACATGATGAAACAATACTCCTCTGGGTGTAATATCAGAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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