Plant MITE

SE2510526

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1756
Brachypodium distachyon
SE2510526
Tc1/Mariner
St14
Bd2:27431397-27431641
TA
TACTCCCTCCGTTCCTTGAAAGAGGGCATATTAGCTTTCGTTAAGACAAGACTTCGACCACAAATTACTATGTTAAAGT

Secondary structure and sequence

TSD TIR

5'

3'

                         G        C               A   C                        ATCC               ACCACAAG    ATGAAGTACTTTTGAT
TACTCCCTCCGTTCCTTGAAAGAGG CATATTAG TTTCGTTAAGACAAG CTT GACCACAAATTACTATGTTAAAGT    TTTATATGACATGAA        TGTT                
||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| ||||||||||||||||||||||||    |||||||||||||||        ||||                A
ATGAGGGAGGCAAGGAACTTTCTCC GTATAATC AAAGTAATTCTGTTC GAA CTGGTGTTTAATGATACAATTTCA    AAATATACTGTACTT        TAGA                
                         A        T               C   A                        CACC               --------    CATAGCGATCTAAACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510526

TACTCCCTCCGTTCCTTGAAAGAGGGCATATTAGCTTTCGTTAAGACAAGACTTCGACCACAAATTACTATGTTAAAGTATCCTTTATATGACATGAAACCACAAGTGTTATGAAGTACTTTTGATAACAAATCTAGCGATACAGATTTCATGTCATATAAACCACACTTTAACATAGTAATTTGTGGTCAAAGCCTTGTCTTAATGAAATCTAATATGACCTCTTTCAAGGAACGGAGGGAGTA

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