Plant MITE

SE2510534

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1764
Brachypodium distachyon
SE2510534
Tc1/Mariner
St19
Bd1:67603652-67603896
TA
TACTCCCTCTGTTCCTCAAATTAAGGCCTATATTGTTTGCTTTGACCGAGCGTTTGACCAAAGATTACTC

Secondary structure and sequence

TSD TIR

5'

3'

                C      A   CTA        G            G         A    -    ----------CATCAACG     CTT       ATAA     ---AA  A  AA    TA
TACTCCCTCTGTTCCT AAATTA GGC   TATTGTTT CTTTGACCGAGC TTTGACCAA GATT ACTC                  TGTGA   ATGCGAT    ATCAT     TC TA  CAAG  
|||||||||||||||| |||||| |||   |||||||| |||||||||||| ||||||||| |||| ||||                  |||||   |||||||    |||||     || ||  ||||   
ATGAGGGAGGCAAGGA TTTAAT CCG   ATAACAAA GAAACTGGTTCG AAACTGGTT CTAA TGAG                  ACACT   TATGTTA    TAGTA     AG AT  GTTT  
                A      C   CAC        A            G         -    A    ATAATTATATATATAAAA     --T       ACTA     ACCAA  C  AA    TC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510534

TACTCCCTCTGTTCCTCAAATTAAGGCCTATATTGTTTGCTTTGACCGAGCGTTTGACCAAAGATTACTCCATCAACGTGTGACTTATGCGATATAAATCATAATCATAAACAAGTACTTTTGAATACGAAACCAATGATATCAATTGTATTTCACAAAAATATATATATTAATAGAGTAAATCTTGGTCAAAGGCTTGGTCAAAGAAAACAATACACGCCCTAATTTAAGGAACGGAGGGAGTA

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