SE2520540

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1770
  • Brachypodium distachyon
  • SE2520540
  • Mutator
  • M14
  • Bd5:11827750-11828341
  • ATAAATCAA
  • GGGTTAATTGGATCTATGGCACTATCTATTTCACCGGTTAGAGATATGCCATTACAAAAACTTGACTTAGAGAAATGCCACTCTAGTTTTCCTATACCTATATCAATGCCATTCTGTCCA

Secondary structure and sequence

TSD    TIR
5'



3'
ATAAATCAA                  G    A               A              C             A              T G    CC       A   CA        C      CTTAAGACCA   A     CATAAAATACATGTATTTCAGCATAACATTATTTACCATAATACCGTTATTTACAACGTTCAATGGTATGTTCGAGTCTTCCAGGCGCCATAAAGGTTAAAAAATAATAATTCAAATTTGGCCCAAAATTCAATCTTCTCAGAAAAATCTAT
         GGGTTAATTGGATCTATG CACT TCTATTTCACCGGTT GAGATATGCCATTA AAAAACTTGACTT GAGAAATGCCACTC A TTTT  TATACCT TAT  ATGCCATT TGTCCA          ATA GTGTT                                                                                                                                                        
         |||||||||||||||||| |||| ||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| | ||||  ||||||| |||  |||||||| ||||||          ||| |||||                                                                                                                                                        A
         CCCAATTAACCTAGATAC GTGA AGATAAGGTGGCCAA TTTTATACGGTAAT TTTTTGAACTGAA CTCTTTACGGTGAG T AAAA  ATATGGA ATA  TACGGTAA ACAGGT          GGT CGTGT                                                                                                                                                        
AACTAAATA                  G    G               C              T             C              T G    -A       G   AG        A      -------TAT   -     GTATGACAGATCTATGCATATCTGTATCGAGATATGTTTATTAAAAAAGGGTAGGATTCAGTTTGTTAAAATAAGAAGAATAAGGGGTGCGCAAAGAGTATAGGGCAGGGATTCCCACCTGAGTATAATGACAAAAAATAAAAGACATCAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End