SE2530543

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1773
  • Brachypodium distachyon
  • SE2530543
  • hAT
  • Hat27
  • Bd2:11942066-11942232
  • ATCCCATG
  • CATGCAGGGGCGGAGCCAGGAAAGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATCC    ----            --   GAA     -   ATGGGTTTCACTCCACTATAATCATGGGGTTCATATGTAGTATTGGGT
    CATG    CAGGGGCGGAGC  CAG   AGGCA ACC                                                
    ||||    ||||||||||||  |||   ||||| |||                                                 
    GTAC    GTCCCCGCCTCG  GTC   TTCGT CGT                                                
        CCTA            AT   ATA     A   AACCCAAGTCTGCTTGAATTATTTTTGTGGTTTAAGTTATCTTTAACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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