SE2510545

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1775
  • Brachypodium distachyon
  • SE2510545
  • Tc1/Mariner
  • St14
  • Bd4:32766216-32766459
  • TA
  • TACTCCCTCCGTTCCTTGAAAGAGGGCATATTAGCTTTCATTAAGACAAGACTTTGACCACAAATTACTGTGTTAAGGTGTGGTTTATATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
                 -                 C    A          A    GA                      G            CATAT --    -  ATCGCTAGATTCGTTATC
TACTCCCTCCGTTCCTT GAAAGAGGGCATATTAG TTTC TTAAGACAAG CTTT  CCACAAATTACTGTGTTAAGGT TGGTTTATATGA     A  ATCT GC                  
||||||||||||||||| ||||||||||||||||| |||| |||||||||| ||||  |||||||||||||||||||||| ||||||||||||     |  |||| ||                   
ATGAGGGAGGCAAGGAA CTTTCTCCTGTATAATC AAAG AATTCTGTTC GAAA  GGTGTTTAATGATACAATTCCA ACCAAATATACT     C  TGGT TT                  
                 A                 A    C          C    --                      G            --CTA TT    G  CATAATACTTCATGAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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