Plant MITE

SE2510552

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1782
Brachypodium distachyon
SE2510552
Tc1/Mariner
St5
Bd2:44076783-44077025
TA
TACTCCCTCCTTTTCACAAAGGTTGGCATATTTTGTTTCGTTAAGACAAGACTTTGACCAAGATTTACTAAATTAATGTGT

Secondary structure and sequence

TSD TIR

5'

3'

                    G      A     T     G      C          C  -A   TT   AA    A     TTTTTCATAC   --  A   ATATCAATAGATTCATCTTCAAAAG
TACTCCCTCCTTTTCACAAA GTTGGC TATTT GTTTC TTAAGA AAGACTTTGA CA  GAT  ACT  ATTA TGTGT          ATG  AA TAT                         
|||||||||||||||||||| |||||| ||||| ||||| |||||| |||||||||| ||  |||  |||  |||| |||||          |||  || |||                         T
ATGAGGGAGGAAAAGTGTTT CAACCG ATAAA CAAAG AATTTT TTCTGAAATT GT  CTA  TGA  TAAT ACACA          TGA  AT ACT                         
                    A      C     C     A      A          A  CA   -T   GA    C     ---------T   AT  -   ATACTTTGGTATTAATCATCGTTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510552

TACTCCCTCCTTTTCACAAAGGTTGGCATATTTTGTTTCGTTAAGACAAGACTTTGACCAAGATTTACTAAATTAATGTGTTTTTTCATACATGAAATATATATCAATAGATTCATCTTCAAAAGTTCTTGCTACTAATTATGGTTTCATATCATATAAGTTACACACTAATAGAGTTATCACTGATTAAAGTCTTATTTTAAAGAAACCAAATACGCCAACATTTGTGAAAAGGAGGGAGTA

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