Plant MITE

SE2510553

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1783
Brachypodium distachyon
SE2510553
Tc1/Mariner
St15
Bd1:14175556-14175774
TA
TACTCCCTCCGTCCCAATATATGAGGCACGCACGCATTCCAAGATTACAAATTTAACTAGCAAAATATAAATTATATTTTATAAAAACTATATCATTAGATTCGTA

Secondary structure and sequence

TSD TIR

5'

3'

                A                 CA      G    CA          G          A      TT A    AAC            TTC   ATTA
TACTCCCTCCGTCCCA TATATGAGGCACGCACG  TTCCAA ATTA  AATTTAACTA CAAAATATAA TTATAT  T TAAA   TATATCATTAGA   GTA    
|||||||||||||||| |||||||||||||||||  |||||| ||||  |||||||||| |||||||||| ||||||  | ||||   ||||||||||||   |||     
ATGAGGGAGGCAGGGT ATATGCTCCGTGCGTGC  AAGGTT TAGT  TTAAATTGAT GTTTTATATT AATATA  A ATTT   ATATAGTAATCT   CAT    
                A                 AA      A    AG          G          C      TT C    CTT            -TT   GTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510553

TACTCCCTCCGTCCCAATATATGAGGCACGCACGCATTCCAAGATTACAAATTTAACTAGCAAAATATAAATTATATTTTATAAAAACTATATCATTAGATTCGTAATTAAATGTACTTTCTAATGATATATTCTTTACATTATATAACTTATATTTTGGTAGTTAAATTGATGATATTGGAAAACGTGCGTGCCTCGTATAATGGGACGGAGGGAGTA

Copy Cancel