SE2520560

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1790
  • Brachypodium distachyon
  • SE2520560
  • Mutator
  • M31
  • Bd3:59133947-59134177
  • CTGGGAAAG
  • AGGGAAAATAATCCTAAGCGACCTGGTCTCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTGGGAA             C    C             CTC   GCTGAAAGACCATGTTCATCTTGTGACACGTGGGAAATCAACTGCATTATAAACATGATTATTATTTTTCTT
       AGGGAAAATAATC TAAG GACCTGGTCTCTC   CAG                                                                        
       ||||||||||||| |||| |||||||||||||   |||                                                                         
       TCCCTTTTATTAG ATTC CTGGGTCAGAGAG   CTC                                                                        
GAAAGGG             A    T             ---   TCTGGGAGACGTACTATCCGGTACACCTATCTAATCGGAAATTTTGATTAGAGTTTCGTAATCGTCACTCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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