Plant MITE

SE2530573

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1803
Brachypodium distachyon
SE2530573
hAT
Hat30
Bd4:29562586-29563200
ATCTTGGT
ATCTTGGTCATGGTTTTAAATAGCACGC

Secondary structure and sequence

TSD TIR

5'

3'

   TT                   A G TACTTTCTCGCTAA    TCGCTATAGCATATTTGAAAATCTGACGCTACGTTTAAGCAATTTTTCTCGCTATGCCGCTATTGTCGCTATTAGTACGCTAAATGGAGCTAAACGCTATTTGCTATATGGTCGCTAAATATTTTAGCGTCCAAAACCCAAATAGTACCACGTGGACCTAAAGACCAGGCTCGAAATCTCTCAGTCTCAGTCTCTCAAATGTAACCGGCTCCACCATGATGGCGGAGGGAGCAGATCCTCTAGCTCGTGACCGGCAGTGGTGGCGACG
ATC  GGTCATGGTTTTAAATAGC C C              AGCG                                                                                                                                                                                                                                                                            
|||  ||||||||||||||||||| | |              ||||                                                                                                                                                                                                                                                                             
TGG  CTAGTACCAAAATTTATCG G G              CTGT                                                                                                                                                                                                                                                                            
   TT                   - G ------------TA    AAATCGCAGCCAGAGGAGGTCTACGATATTTGCGATATCTCACGATATCGCGTGTGATAAAGTTTATCGCAAAACATTTTATATACTTAGCTTATATCGGGTTTTAATTTTCAAAGTAGTATTGTTGCATGATTTTTCAAGAGGTTAGTAAATGTTCTGGTTTAGGTACTGTCTTTGTTTTTATACTTCGTAATAGCCTCGTGACCTCCACAACGGCGACAAGCGCTCGACCTCCTTTCCTCCGGACAACGCTCAACCTCCTTCTTCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530573

ATCTTGGTCATGGTTTTAAATAGCACGCTACTTTCTCGCTAAAGCGTCGCTATAGCATATTTGAAAATCTGACGCTACGTTTAAGCAATTTTTCTCGCTATGCCGCTATTGTCGCTATTAGTACGCTAAATGGAGCTAAACGCTATTTGCTATATGGTCGCTAAATATTTTAGCGTCCAAAACCCAAATAGTACCACGTGGACCTAAAGACCAGGCTCGAAATCTCTCAGTCTCAGTCTCTCAAATGTAACCGGCTCCACCATGATGGCGGAGGGAGCAGATCCTCTAGCTCGTGACCGGCAGTGGTGGCGACGACTTCTTCCTCCAACTCGCAACAGGCCTCCTTTCCTCCAGCTCGCGAACAGCGGCAACACCTCCAGTGCTCCGATAATGCTTCATATTTTTGTTTCTGTCATGGATTTGGTCTTGTAAATGATTGGAGAACTTTTTAGTACGTTGTTATGATGAAACTTTTAATTTTGGGCTATATTCGATTCATATATTTTACAAAACGCTATTTGAAATAGTGTGCGCTATAGCACTCTATAGCGTTTATAGCATCTGGAGGAGACCGACGCTAAATGTCATGGGGCTATTTAAAACCATGATCTTGGT

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