SE2530593

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1823
  • Brachypodium distachyon
  • SE2530593
  • hAT
  • Hat11
  • Bd5:2540338-2540520
  • CTTCTCTG
  • GCATGGGCGGAGCCAGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTCTCT           G      GAAAA -       G GGCACTTAAACATTCTTAAGAGGTATAAGTTAAATTAGAGGGAGCATCAAT
       GCATGGGCGGA CCAGCA     C TTGAGAG G                                                   
       ||||||||||| ||||||     | ||||||| |                                                   G
       CGTACCCGCCT GGTCGT     G TCACCCC C                                                   
GTCTCTT           A      ACATC G       - GGTTACGGGGGTGAGTTAAAACTATATGGTAATGTTTAAAATCTAAAAGTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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