Plant MITE

SE2510594

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1824
Brachypodium distachyon
SE2510594
Tc1/Mariner
St43
Bd3:13707676-13708000
TA
TACTCCCTCCGTCCGGTTTTAGGAGGCGT

Secondary structure and sequence

TSD TIR

5'

3'

                             ---AAATTTGAA    GTGGTCCAGATTTTGTAGGCGCCTGGTTTCTCCGAGGCGCCAGCAACTGAAATGGTCTCCCTGCATGTATGCTCGCACGCAGCCGTAGCCAATACAAGTGTGCGGCCGGGCGGAGCTGG
TACTCCCTCCGTCCGGTTTTAGGAGGCGT            TGCT                                                                                                                       
|||||||||||||||||||||||||||||            ||||                                                                                                                        
ATGAGGGAGGCAGGCCAAAATCCTCCGCG            CGGG                                                                                                                       
                             CAAAAGAAAAAG    CATGGTTCCGAACGACGGTGTGTACGTACGACCTGTATTAATCGGAAGTGCGCGTCAGGATTCGTTGGACATGTCGGTTAGTTGTATCGTACACGTCGGTCGTAAATACTGTTACGTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510594

TACTCCCTCCGTCCGGTTTTAGGAGGCGTAAATTTGAATGCTGTGGTCCAGATTTTGTAGGCGCCTGGTTTCTCCGAGGCGCCAGCAACTGAAATGGTCTCCCTGCATGTATGCTCGCACGCAGCCGTAGCCAATACAAGTGTGCGGCCGGGCGGAGCTGGCATGCATTGTCATAAATGCTGGCTGCACATGCTATGTTGATTGGCTGTACAGGTTGCTTAGGACTGCGCGTGAAGGCTAATTATGTCCAGCATGCATGTGTGGCAGCAAGCCTTGGTACGGGCGAAAAAGAAAACGCGCCTCCTAAAACCGGACGGAGGGAGTA

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